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LOC4335574 quinone-oxidoreductase QR1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335574, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4335574
Gene description
quinone-oxidoreductase QR1, chloroplastic
Locus tag
OSNPB_040359100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in roots before flowering (RPKM 41.5), flowers (RPKM 40.1) and 2 other tissues See more
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Genomic context

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See LOC4335574 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (17528493..17531897)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (17180151..17183507)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4335571 Neighboring gene DNA glycosylase/AP lyase ROS1 Neighboring gene quinone-oxidoreductase QR1, chloroplastic Neighboring gene cytosolic sulfotransferase 8 Neighboring gene quinone-oxidoreductase QR1, chloroplastic-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
quinone-oxidoreductase QR1, chloroplastic
Names
Os04g0359100
Os04g0359200
putative quinone-oxidoreductase homolog, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    17528493..17531897
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015778412.3 → XP_015633898.1  quinone-oxidoreductase QR1, chloroplastic

    UniProtKB/TrEMBL
    B8BI22, Q01KS1, Q0JDX5, Q7XMU7
    Conserved Domains (1) summary
    cd08267
    Location:13 → 330
    MDR1; Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family
Nucleotide Protein
Heading Accession and Version

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