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LOC4335666 protein NUCLEAR FUSION DEFECTIVE 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335666, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4335666
Gene description
protein NUCLEAR FUSION DEFECTIVE 4
Locus tag
OSNPB_040388700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 23.9), roots after flowering (RPKM 23.6) and 6 other tissues See more
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Genomic context

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See LOC4335666 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (19477771..19482192)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (19122569..19126995)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene calmodulin-binding transcription activator 4 Neighboring gene mediator of RNA polymerase II transcription subunit 30 Neighboring gene uncharacterized LOC4335667 Neighboring gene uncharacterized LOC112936013 Neighboring gene transposon Ty3-G Gag-Pol polyprotein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein NUCLEAR FUSION DEFECTIVE 4
Names
Os04g0388700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    19477771..19482192
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781237.3 → XP_015636723.1  protein NUCLEAR FUSION DEFECTIVE 4

    UniProtKB/TrEMBL
    A0A0P0W9G2, B7EB87, B8AT77, Q01LE2
    Conserved Domains (2) summary
    cd17354
    Location:15 → 564
    MFS_Mch1p_like; Monocarboxylate transporter-homologous (Mch) 1 protein and similar transporters of the Major Facilitator Superfamily of transporters
    cl28910
    Location:121 → 301
    MFS; Major Facilitator Superfamily
Nucleotide Protein
Heading Accession and Version

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