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LOC4335707 ethylene-responsive transcription factor ERF113 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335707, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4335707
Gene description
ethylene-responsive transcription factor ERF113
Locus tag
OSNPB_040398000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 6.3), mature seeds (RPKM 4.2) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (20019847..20022041)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (19651445..19655236)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene protein MHF1 homolog Neighboring gene uncharacterized LOC9266956 Neighboring gene glycine--tRNA ligase, mitochondrial 1 Neighboring gene cytochrome b-c1 complex subunit Rieske, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ethylene-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor ERF113
Names
Os04g0398000

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    20019847..20022041
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781117.3 → XP_015636603.1  ethylene-responsive transcription factor ERF113

    UniProtKB/TrEMBL
    A0A0P0WA11, A2XSY7, Q7XLG6
    Conserved Domains (1) summary
    smart00380
    Location:66 → 124
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version

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