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LOC4335962 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335962, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4335962
Gene description
3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic
Locus tag
OSNPB_040445700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 21.5), flowers (RPKM 15.0) and 4 other tissues See more
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Genomic context

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See LOC4335962 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22706057..22710354, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22216911..22221338, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene trihelix transcription factor ENAP2 Neighboring gene sm-like protein LSM1B Neighboring gene protein LURP-one-related 6 Neighboring gene pentatricopeptide repeat-containing protein At2g06000

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-oxoacyl-[acyl-carrier-protein] synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic
Names
Os04g0445700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    22706057..22710354 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015778803.3 → XP_015634289.1  3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic

    UniProtKB/TrEMBL
    B7F6I0, Q7XUW9
    Conserved Domains (1) summary
    cl09938
    Location:47 → 461
    cond_enzymes; Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the ...
Nucleotide Protein
Heading Accession and Version

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