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LOC4335978 uncharacterized LOC4335978 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335978, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4335978
Gene description
uncharacterized LOC4335978
Locus tag
OSNPB_040448100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 2.8), flower buds (RPKM 1.9) and 6 other tissues See more
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Genomic context

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See LOC4335978 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22830291..22832682, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22337499..22339894, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene glutamate decarboxylase 4 Neighboring gene uncharacterized LOC107278255 Neighboring gene uncharacterized LOC9269545 Neighboring gene uncharacterized LOC4335979 Neighboring gene aspartic proteinase nepenthesin-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4335978
Names
Os04g0448100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    22830291..22832682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015778823.3 → XP_015634309.1  uncharacterized protein LOC4335978

    UniProtKB/TrEMBL
    A0A0N7KJ49, A2XTZ8, Q01J79, Q0JCV3, Q7XTD0
    Conserved Domains (1) summary
    pfam07800
    Location:49 → 202
    DUF1644; Protein of unknown function (DUF1644)
Nucleotide Protein
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