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LOC4336108 heavy metal-associated isoprenylated plant protein 41 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336108, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4336108
Gene description
heavy metal-associated isoprenylated plant protein 41
Locus tag
OSNPB_040468600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in roots before flowering (RPKM 273.3), leaves after flowering (RPKM 105.8) and 1 other tissue See more
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Genomic context

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See LOC4336108 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (23903036..23904771, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (23408494..23410121, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277191 Neighboring gene uncharacterized LOC107280571 Neighboring gene heavy metal-associated isoprenylated plant protein 16 Neighboring gene heavy metal-associated isoprenylated plant protein 16-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
heavy metal-associated isoprenylated plant protein 41
Names
Os04g0468600
wiskott-Aldrich syndrome protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    23903036..23904771 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015778286.2 → XP_015633772.1  heavy metal-associated isoprenylated plant protein 41

    UniProtKB/TrEMBL
    A0A0P0WBA3, A0A0P0WBG6, A0A5S6RA54, A2XUG7, Q01IR6, Q0JCI3, Q7XJV6
Nucleotide Protein
Heading Accession and Version

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