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LOC4336149 protein THYLAKOID ASSEMBLY 8, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336149, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4336149
Gene description
protein THYLAKOID ASSEMBLY 8, chloroplastic
Locus tag
OSNPB_040475500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 15.6), leaves after flowering (RPKM 9.5) and 6 other tissues See more
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Genomic context

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See LOC4336149 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (24285927..24288083, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (23790789..23792955, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4336148 Neighboring gene NAC domain-containing protein 23 Neighboring gene 2-oxoglutarate-dependent dioxygenase DAO-like Neighboring gene pentatricopeptide repeat-containing protein At3g04760, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Group II intron splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chloroplast organization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein THYLAKOID ASSEMBLY 8, chloroplastic
Names
Os04g0475500
pentatricopeptide repeat-containing protein At3g46870

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    24285927..24288083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015778599.3 → XP_015634085.1  protein THYLAKOID ASSEMBLY 8, chloroplastic

    UniProtKB/TrEMBL
    A0A0P0WBN4, Q7XKU6
    Conserved Domains (2) summary
    sd00004
    Location:123 → 149
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:153 → 200
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version

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