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LOC4336202 very-long-chain 3-oxoacyl-CoA reductase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336202, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4336202
Gene description
very-long-chain 3-oxoacyl-CoA reductase 1
Locus tag
OSNPB_040483500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flower buds (RPKM 25.3), flowers (RPKM 24.2) and 5 other tissues See more
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Genomic context

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See LOC4336202 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (24672374..24675679, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24175637..24178971, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized membrane protein At3g27390 Neighboring gene uncharacterized LOC4336201 Neighboring gene uncharacterized LOC107277960 Neighboring gene uncharacterized LOC4336203 Neighboring gene uncharacterized LOC112938772

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Wax crystal-sparse leaf 3 encoding a β-ketoacyl-CoA reductase is involved in cuticular wax biosynthesis in rice. Gan L, et al. Plant Cell Rep, 2016 Aug. PMID 27106031
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ketoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
very-long-chain 3-oxoacyl-CoA reductase 1
Names
Os04g0483500
wax crystal-sparse leaf 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    24672374..24675679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015778168.3 → XP_015633654.1  very-long-chain 3-oxoacyl-CoA reductase 1

    UniProtKB/TrEMBL
    A3AUZ5, Q01IG3, Q7XQF8
    Conserved Domains (1) summary
    PLN02780
    Location:1 → 316
    PLN02780; ketoreductase/ oxidoreductase
Nucleotide Protein
Heading Accession and Version

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