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LOC4336204 anaphase-promoting complex subunit 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336204, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4336204
Gene description
anaphase-promoting complex subunit 2
Locus tag
OSNPB_040484800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4336204 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (24725973..24733633)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24229227..24237025)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein At3g26922-like Neighboring gene uncharacterized LOC136356276 Neighboring gene predicted GPI-anchored protein 58 Neighboring gene elongator complex protein 3-like Neighboring gene 26S proteasome non-ATPase regulatory subunit 6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in metaphase/anaphase transition of mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K11-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of anaphase-promoting complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
anaphase-promoting complex subunit 2
Names
Os04g0484800

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419590.1 → NP_001406519.1  anaphase-promoting complex subunit 2

    Status: VALIDATED

    Source sequence(s)
    AK068962
    UniProtKB/TrEMBL
    A0A0P0WBL9, B7EFN8, B8AVW5, Q0JC96

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    24725973..24733633
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015780314.3 → XP_015635800.1  anaphase-promoting complex subunit 2 isoform X1

    UniProtKB/TrEMBL
    B9FFT0
    Conserved Domains (2) summary
    smart00182
    Location:536 → 684
    CULLIN; Cullin
    pfam08672
    Location:802 → 861
    ANAPC2; Anaphase promoting complex (APC) subunit 2
Nucleotide Protein
Heading Accession and Version

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