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LOC4336206 26S proteasome non-ATPase regulatory subunit 6-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336206, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4336206
Gene description
26S proteasome non-ATPase regulatory subunit 6-like
Locus tag
OSNPB_040485000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RPN7; OsRPN7; OsJ_15241; OJ000223_09.5
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Genomic context

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See LOC4336206 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (24737649..24740491)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24240921..24243763)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene anaphase-promoting complex subunit 2 Neighboring gene elongator complex protein 3-like Neighboring gene serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' Neighboring gene plant UBX domain-containing protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
26S proteasome non-ATPase regulatory subunit 6
Names
26S proteasome regulatory particle non-ATPase subunit 7
26S proteasome regulatory particle non-ATPase subunit7
26S proteasome regulatory subunit RPN7
LOC_Os04g40850
OSJNBa0081L15.15

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402380.1 → NP_001389309.1  26S proteasome non-ATPase regulatory subunit 6

    Status: VALIDATED

    Source sequence(s)
    CB650738, CB664296, CI520796, CI585415
    UniProtKB/Swiss-Prot
    Q0JC94, Q7X751, Q8W425
    UniProtKB/TrEMBL
    A2XUT7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    24737649..24740491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8W425.1 GenPept UniProtKB/Swiss-Prot:Q8W425

Gene LinkOut

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Molecular Biology Databases
Research Materials