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LOC4336254 DNA-directed RNA polymerase III subunit 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336254, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4336254
Gene description
DNA-directed RNA polymerase III subunit 1
Locus tag
OSNPB_040492300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 14.1), flower buds (RPKM 13.3) and 6 other tissues See more
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Genomic context

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See LOC4336254 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25090062..25101716)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24593234..24604893)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase ARI8 Neighboring gene uncharacterized LOC107280649 Neighboring gene uncharacterized LOC4336255 Neighboring gene eIF-2-alpha kinase GCN2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase III subunit 1
Names
Os04g0492300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    25090062..25101716
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015780945.3 → XP_015636431.1  DNA-directed RNA polymerase III subunit 1

    UniProtKB/TrEMBL
    B8AVV8, B9FFW1, Q01IA5, Q7FAC6, Q7X881
    Conserved Domains (2) summary
    cd02736
    Location:1022 → 1361
    RNAP_III_Rpc1_C; Largest subunit (Rpc1) of Eukaryotic RNA polymerase III (RNAP III), C-terminal domain
    cd02583
    Location:32 → 882
    RNAP_III_RPC1_N; Largest subunit (RPC1) of eukaryotic RNA polymerase III (RNAP III), N-terminal domain

RNA

  1. XR_010740696.1 RNA Sequence

  2. XR_001545551.3 RNA Sequence

  3. XR_010740697.1 RNA Sequence

  4. XR_001545550.3 RNA Sequence

  5. XR_010740698.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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