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LOC4336287 la protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336287, updated on 17-Jul-2024

Summary

Gene symbol
LOC4336287
Gene description
la protein 1
Locus tag
OSNPB_040497600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

See LOC4336287 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25380124..25384043, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24882790..24886774, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-like-conjugating enzyme ATG10 Neighboring gene 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic Neighboring gene zinc finger protein CONSTANS-LIKE 3 Neighboring gene uncharacterized LOC4336289

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
la protein 1
Names
Os04g0497600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    25380124..25384043 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781765.3XP_015637251.1  la protein 1

    UniProtKB/TrEMBL
    A0A0P0WC11, A2XV51, Q01IC5, Q7XQH8
    Conserved Domains (3) summary
    cd08030
    Location:16105
    LA_like_plant; La-motif domain of plant proteins similar to the La autoantigen
    cd12291
    Location:123195
    RRM1_La; RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins
    cl17169
    Location:304400
    RRM_SF; RNA recognition motif (RRM) superfamily