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LOC4336331 polyadenylate-binding protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336331, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4336331
Gene description
polyadenylate-binding protein 2
Locus tag
OSNPB_040504800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 100.3), flower buds (RPKM 84.9) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25692258..25698637, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (25194827..25201219, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene AP2-like ethylene-responsive transcription factor BBM1 Neighboring gene uncharacterized LOC4336329 Neighboring gene uncharacterized LOC9271281 Neighboring gene filament-like plant protein 7 Neighboring gene uncharacterized protein At4g06744

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(A) binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables poly(U) RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyadenylate-binding protein 2
Names
Os04g0504800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    25692258..25698637 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015780068.3 → XP_015635554.1  polyadenylate-binding protein 2

    UniProtKB/TrEMBL
    B8ARD0, Q0JBX5, Q7F8Y1
    Conserved Domains (1) summary
    TIGR01628
    Location:40 → 633
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
Nucleotide Protein
Heading Accession and Version

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