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LOC4336359 receptor-like serine/threonine-protein kinase ALE2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336359, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4336359
Gene description
receptor-like serine/threonine-protein kinase ALE2
Locus tag
OSNPB_040509000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flowers (RPKM 3.9), flower buds (RPKM 2.7) and 5 other tissues See more
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Genomic context

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See LOC4336359 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25954195..25960281)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (25453364..25459669)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene general transcription factor IIH subunit 2 Neighboring gene uncharacterized LOC107280674 Neighboring gene uncharacterized LOC4336360 Neighboring gene uncharacterized LOC4336361

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor-like serine/threonine-protein kinase ALE2
Names
Os04g0509000

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    25954195..25960281
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015780514.3 → XP_015636000.1  receptor-like serine/threonine-protein kinase ALE2

    UniProtKB/TrEMBL
    B8ARP3, Q7X6D5
    Conserved Domains (1) summary
    cd14066
    Location:346 → 616
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
Nucleotide Protein
Heading Accession and Version

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