U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4336386 putative disease resistance RPP13-like protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336386, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4336386
Gene description
putative disease resistance RPP13-like protein 1
Locus tag
OSNPB_040512900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4336386 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (26132744..26137744, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (25631904..25636909, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene septin and tuftelin-interacting protein 1 homolog 1-like Neighboring gene septin and tuftelin-interacting protein 1 homolog 1-like Neighboring gene uncharacterized protein At4g13200, chloroplastic Neighboring gene probable inactive beta-glucosidase 14

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in defense response to other organism IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
putative disease resistance RPP13-like protein 1
Names
Os04g0512900

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    26132744..26137744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781305.3 → XP_015636791.1  putative disease resistance RPP13-like protein 1

    UniProtKB/TrEMBL
    B8ARQ9, B9FG46, Q7XPY8
    Conserved Domains (6) summary
    PLN00113
    Location:586 → 978
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    COG4886
    Location:606 → 678
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:603 → 625
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:698 → 720
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00931
    Location:184 → 429
    NB-ARC; NB-ARC domain
    pfam18052
    Location:63 → 107
    Rx_N; Rx N-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials