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LOC4336554 glutamate dehydrogenase 2, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336554, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4336554
Gene description
glutamate dehydrogenase 2, mitochondrial-like
Locus tag
OSNPB_040543900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GDH2; OsGDH2
Expression
Broad expression in roots before flowering (RPKM 84.0), flower buds (RPKM 55.6) and 6 other tissues See more
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Genomic context

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See LOC4336554 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (27738337..27743159)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (27233367..27238183)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene cationic amino acid transporter 6, chloroplastic Neighboring gene subtilisin-like protease SBT2.5 Neighboring gene uncharacterized LOC136356073 Neighboring gene small nucleolar RNA Z107/R87 Neighboring gene small nucleolar RNA snoR2/U65

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Localization of NAD-isocitrate dehydrogenase and glutamate dehydrogenase in rice roots: candidates for providing carbon skeletons to NADH-glutamate synthase. Abiko T, et al. Plant Cell Physiol, 2005 Oct. PMID 16120687
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glutamate dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutamate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamate dehydrogenase 2, mitochondrial
Names
OSNPB_040543900
Os04g0543900
NP_001389335.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402406.1 → NP_001389335.1  glutamate dehydrogenase 2, mitochondrial

    Status: VALIDATED

    Source sequence(s)
    AB189166, CB671950, CI066621, CI564261
    UniProtKB/Swiss-Prot
    A2XW22, B9FGE7, Q33E23
    UniProtKB/TrEMBL
    Q7XN06

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    27738337..27743159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q33E23.1 GenPept UniProtKB/Swiss-Prot:Q33E23

Gene LinkOut

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Molecular Biology Databases
Research Materials