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LOC4336578 putative kinase-like protein TMKL1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336578, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4336578
Gene description
putative kinase-like protein TMKL1
Locus tag
OSNPB_040548400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 8.3), roots before flowering (RPKM 5.2) and 6 other tissues See more
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Genomic context

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See LOC4336578 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (27965801..27968644, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (27460852..27463795, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene deSI-like protein At4g17486 Neighboring gene disease resistance protein RPM1 Neighboring gene uncharacterized protein At3g06530 Neighboring gene uncharacterized LOC107280699 Neighboring gene homeobox-leucine zipper protein HOX17-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative kinase-like protein TMKL1
Names
Os04g0548400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    27965801..27968644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015778603.3 → XP_015634089.1  putative kinase-like protein TMKL1

    UniProtKB/TrEMBL
    A2XW57, Q01I25, Q5CAF7
    Conserved Domains (1) summary
    cl21453
    Location:96 → 369
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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