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LOC4336689 protein indeterminate-domain 4, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336689, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4336689
Gene description
protein indeterminate-domain 4, chloroplastic-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 37.4), leaves after flowering (RPKM 36.6) and 6 other tissues See more
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Genomic context

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See LOC4336689 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (28914692..28922026)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (28409365..28416018)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene protein CHROMATIN REMODELING 19 Neighboring gene uncharacterized LOC112938770 Neighboring gene protein argonaute 1B-like Neighboring gene putative Myb family transcription factor At1g14600

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein indeterminate-domain 4, chloroplastic-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    28914692..28922026
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066309538.1 → XP_066165635.1  protein indeterminate-domain 4, chloroplastic-like isoform X1

  2. XM_066309540.1 → XP_066165637.1  protein indeterminate-domain 4, chloroplastic-like isoform X2

  3. XM_066309539.1 → XP_066165636.1  protein indeterminate-domain 4, chloroplastic-like isoform X1

  4. XM_066309542.1 → XP_066165639.1  protein indeterminate-domain 4, chloroplastic-like isoform X2

Nucleotide Protein
Heading Accession and Version

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