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LOC4336763 brassinosteroid-responsive RING protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336763, updated on 13-Jul-2024

Summary

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Gene symbol
LOC4336763
Gene description
brassinosteroid-responsive RING protein 1
Locus tag
OSNPB_040580800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4336763 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (29823621..29824959, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (29317350..29318490, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4336761 Neighboring gene MADS-box transcription factor 17-like Neighboring gene probable E3 ubiquitin-protein ligase ATL45 Neighboring gene flavanone 3-dioxygenase 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
brassinosteroid-responsive RING protein 1
Names
Os04g0580800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    29823621..29824959 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015778842.3 → XP_015634328.1  brassinosteroid-responsive RING protein 1

    UniProtKB/TrEMBL
    A0A0P0WE45, A2XWR3, Q0JAS3, Q7XUN1
    Conserved Domains (1) summary
    cd16448
    Location:101 → 144
    RING-H2; H2 subclass of RING (RING-H2) finger and its variants
Nucleotide Protein
Heading Accession and Version

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