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LOC4336788 protein S-acyltransferase 21 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336788, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4336788
Gene description
protein S-acyltransferase 21
Locus tag
OSNPB_040585100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 4.0), flowers (RPKM 2.3) and 5 other tissues See more
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Genomic context

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See LOC4336788 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30062978..30069569, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (29556830..29563284, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene protein MULTIPLE CHLOROPLAST DIVISION SITE 1 Neighboring gene probable E3 ubiquitin-protein ligase ATL44 Neighboring gene Glutamate receptor 3.1 Neighboring gene glutamate receptor 3.1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-cysteine S-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-L-cysteine S-palmitoylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable protein S-acyltransferase 19; protein S-acyltransferase 21
Names
Os04g0585100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    30062978..30069569 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026025223.2 → XP_025881008.1  probable protein S-acyltransferase 19 isoform X2

    UniProtKB/TrEMBL
    B8ATD2
    Conserved Domains (1) summary
    pfam01529
    Location:105 → 241
    zf-DHHC; DHHC palmitoyltransferase

  2. XM_015778626.3 → XP_015634112.1  protein S-acyltransferase 21 isoform X1

    UniProtKB/TrEMBL
    B8ATD2, B9FC61, Q7XP60
    Conserved Domains (1) summary
    pfam01529
    Location:143 → 279
    DHHC; DHHC palmitoyltransferase
Nucleotide Protein
Heading Accession and Version

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