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LOC4336830 WEB family protein At5g16730, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336830, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4336830
Gene description
WEB family protein At5g16730, chloroplastic
Locus tag
OSNPB_040592400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flowers (RPKM 24.9), flower buds (RPKM 14.8) and 6 other tissues See more
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Genomic context

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See LOC4336830 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30471252..30474324)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (29964943..29968164)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355984 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene uncharacterized LOC4336831 Neighboring gene uncharacterized LOC136355930

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in reciprocal meiotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WEB family protein At5g16730, chloroplastic
Names
Os04g0592400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    30471252..30474324
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015780559.3 → XP_015636045.1  WEB family protein At5g16730, chloroplastic

    UniProtKB/TrEMBL
    A0A0P0WEE6, A0A5S6R8N0, Q01HH5, Q0JAK9, Q5VSV9
    Conserved Domains (2) summary
    PTZ00121
    Location:2 → 721
    PTZ00121; MAEBL; Provisional
    COG1196
    Location:306 → 645
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
Heading Accession and Version

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