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LOC4336909 WRKY transcription factor WRKY51-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336909, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4336909
Gene description
WRKY transcription factor WRKY51-like
Locus tag
OSNPB_040605100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 100.1), flower buds (RPKM 28.9) and 6 other tissues See more
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Genomic context

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See LOC4336909 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (31051470..31052813)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30545151..30546570)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356253 Neighboring gene xyloglucan endotransglucosylase protein 7 Neighboring gene xyloglucan endotransglucosylase protein 7 Neighboring gene uncharacterized LOC4336910 Neighboring gene plant intracellular Ras-group-related LRR protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WRKY transcription factor WRKY51-like
Names
Os04g0605100
probable WRKY transcription factor 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    31051470..31052813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015778146.3 → XP_015633632.1  WRKY transcription factor WRKY51-like

    UniProtKB/TrEMBL
    A0A172ZNK8, A0A6F8F8P2, A3AX61, Q6IEL3, Q7XNY3
    Conserved Domains (2) summary
    pfam03106
    Location:223 → 279
    WRKY; WRKY DNA -binding domain
    pfam10533
    Location:182 → 219
    Plant_zn_clust; Plant zinc cluster domain
Nucleotide Protein
Heading Accession and Version

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