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LOC4336998 probable LRR receptor-like serine/threonine-protein kinase At1g56130 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336998, discontinued on 12-Jul-2024

Summary

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Gene symbol
LOC4336998
Gene description
probable LRR receptor-like serine/threonine-protein kinase At1g56130
Gene type
protein coding
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 7.9), flowers (RPKM 5.8) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 4
Exon count:
24
Annotation release Status Assembly Chr Location
102 latest, but not current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31285362..31298408, complement)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Names
probable LRR receptor-like serine/threonine-protein kinase At1g56130
Os04g0616400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 (NOTE: not current)

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

    Range
    31285362..31298408 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781071.2 → XP_015636557.1  

    Conserved Domains (3) summary
    PLN00113
    Location:105 → 970
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    cd14066
    Location:708 → 970
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    sd00033
    Location:117 → 140
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_015781072.2 → XP_015636558.1  

    Conserved Domains (4) summary
    smart00221
    Location:710 → 972
    STYKc; Protein kinase; unclassified specificity
    cd14066
    Location:710 → 972
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    sd00033
    Location:117 → 142
    LRR_RI; leucine-rich repeat [structural motif]
    pfam11721
    Location:424 → 609
    Malectin; Di-glucose binding within endoplasmic reticulum

  3. XM_026025048.1 → XP_025880833.1  

    Conserved Domains (5) summary
    COG4886
    Location:15 → 186
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd14066
    Location:568 → 830
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    sd00033
    Location:25 → 48
    LRR_RI; leucine-rich repeat [structural motif]
    pfam11721
    Location:282 → 467
    Malectin; Di-glucose binding within endoplasmic reticulum
    cl26793
    Location:163 → 251
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
Nucleotide Protein
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