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LOC4337062 uncharacterized LOC4337062 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337062, updated on 3-Dec-2024

Summary

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Gene symbol
LOC4337062
Gene description
uncharacterized LOC4337062
Locus tag
OSNPB_040625300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4337062 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (32296161..32309015, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31788421..31803243, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337060 Neighboring gene 1-acyl-sn-glycerol-3-phosphate acyltransferase Neighboring gene BTB/POZ and MATH domain-containing protein 1 Neighboring gene BTB/POZ and MATH domain-containing protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4337062
Names
Os04g0625300
Os04g0625350

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    32296161..32309015 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066309674.1 → XP_066165771.1  uncharacterized protein LOC4337062 isoform X2

    UniProtKB/TrEMBL
    B9FCM1, Q7XPP8

  2. XM_015780650.3 → XP_015636136.1  uncharacterized protein LOC4337062 isoform X2

    UniProtKB/TrEMBL
    B9FCM1, Q7XPP8
    Conserved Domains (2) summary
    pfam11707
    Location:115 → 422
    Npa1; Ribosome 60S biogenesis N-terminal
    pfam16201
    Location:2069 → 2259
    NopRA1; Nucleolar pre-ribosomal-associated protein 1

  3. XM_015780649.3 → XP_015636135.1  uncharacterized protein LOC4337062 isoform X1

    UniProtKB/TrEMBL
    B9FCM1, Q7XPP8
    Conserved Domains (2) summary
    pfam11707
    Location:115 → 423
    Npa1; Ribosome 60S biogenesis N-terminal
    pfam16201
    Location:2069 → 2259
    NopRA1; Nucleolar pre-ribosomal-associated protein 1

  4. XM_015780648.3 → XP_015636134.1  uncharacterized protein LOC4337062 isoform X1

    UniProtKB/TrEMBL
    B9FCM1, Q7XPP8
    Conserved Domains (2) summary
    pfam11707
    Location:115 → 423
    Npa1; Ribosome 60S biogenesis N-terminal
    pfam16201
    Location:2069 → 2259
    NopRA1; Nucleolar pre-ribosomal-associated protein 1
Nucleotide Protein
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