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LOC4337352 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337352, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4337352
Gene description
OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7
Locus tag
OSNPB_040670400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 8.9), leaves after flowering (RPKM 8.2) and 6 other tissues See more
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Genomic context

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See LOC4337352 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34720902..34725565, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34201019..34205705, complement)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene reticulon-like protein B11 Neighboring gene uncharacterized protein At4g06744 Neighboring gene oryzain beta chain-like Neighboring gene cysteine protease 1-like Neighboring gene probable phytol kinase 1, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7
Names
OTU domain-containing protein 3
Os04g0670400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    34720902..34725565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066310074.1 → XP_066166171.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X3

    UniProtKB/TrEMBL
    Q258Z6

  2. XM_066310078.1 → XP_066166175.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X10

    UniProtKB/TrEMBL
    Q0J961

  3. XM_015777942.3 → XP_015633428.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X8

    UniProtKB/TrEMBL
    Q0J961
    Conserved Domains (1) summary
    cl19932
    Location:2 → 104
    OTU; OTU-like cysteine protease

  4. XM_015777943.3 → XP_015633429.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X8

    UniProtKB/TrEMBL
    Q0J961
    Conserved Domains (1) summary
    cl19932
    Location:2 → 104
    OTU; OTU-like cysteine protease

  5. XM_066310080.1 → XP_066166177.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X12

    UniProtKB/TrEMBL
    Q0J961

  6. XM_066310079.1 → XP_066166176.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X11

    UniProtKB/TrEMBL
    Q0J961

  7. XM_015777944.3 → XP_015633430.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X9

    UniProtKB/TrEMBL
    Q0J961
    Conserved Domains (1) summary
    cl19932
    Location:1 → 92
    OTU; OTU-like cysteine protease

  8. XM_066310075.1 → XP_066166172.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X5

    UniProtKB/TrEMBL
    Q258Z6

  9. XM_015777938.3 → XP_015633424.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X2

    UniProtKB/TrEMBL
    Q258Z6
    Conserved Domains (1) summary
    cl19932
    Location:52 → 164
    OTU; OTU-like cysteine protease

  10. XM_015777939.3 → XP_015633425.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X4

    UniProtKB/TrEMBL
    B8ARH9, B9FD82, Q258Z6
    Conserved Domains (1) summary
    cl19932
    Location:52 → 164
    OTU; OTU-like cysteine protease

  11. XM_015777937.3 → XP_015633423.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X1

    UniProtKB/TrEMBL
    Q258Z6
    Conserved Domains (1) summary
    cl19932
    Location:52 → 164
    OTU; OTU-like cysteine protease

  12. XM_066310076.1 → XP_066166173.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X7

    UniProtKB/TrEMBL
    Q0J961

  13. XM_015777941.3 → XP_015633427.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X6

    UniProtKB/TrEMBL
    Q0J961
    Conserved Domains (1) summary
    cl19932
    Location:9 → 114
    OTU; OTU-like cysteine protease

RNA

  1. XR_010741061.1 RNA Sequence

  2. XR_010741062.1 RNA Sequence

  3. XR_010741058.1 RNA Sequence

  4. XR_010741059.1 RNA Sequence

  5. XR_010741055.1 RNA Sequence

  6. XR_010741056.1 RNA Sequence

  7. XR_001544896.3 RNA Sequence

  8. XR_010741060.1 RNA Sequence

  9. XR_010741057.1 RNA Sequence

  10. XR_001544898.3 RNA Sequence

Nucleotide Protein
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