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LOC4337638 glycine-rich protein A3 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337638, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4337638
Gene description
glycine-rich protein A3
Locus tag
OSNPB_050119300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 1363.3), leaves before flowering (RPKM 514.9) and 6 other tissues See more
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Genomic context

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See LOC4337638 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (1013094..1015253, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (1000544..1002836, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337636 Neighboring gene uncharacterized LOC4337637 Neighboring gene uncharacterized LOC112939006 Neighboring gene protein NETWORKED 2D Neighboring gene uncharacterized LOC4337640

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
glycine-rich protein A3
Names
Os05g0119300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    1013094..1015253 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015784555.3 → XP_015640041.1  glycine-rich protein A3

    UniProtKB/TrEMBL
    A0A8J8XV42, B7EJK6, B9FKD5, Q0DL76, Q6V8K5

  2. XM_066311065.1 → XP_066167162.1  glycine-rich protein A3

    UniProtKB/TrEMBL
    A0A8J8XV42, B7EJK6, B9FKD5, Q0DL76, Q6V8K5
Nucleotide Protein
Heading Accession and Version

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