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LOC4337783 ribosome biogenesis protein NOP53 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337783, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4337783
Gene description
ribosome biogenesis protein NOP53
Locus tag
OSNPB_050144200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in mature seeds (RPKM 32.9), flower buds (RPKM 21.4) and 6 other tissues See more
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Genomic context

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See LOC4337783 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (2555829..2560481, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (2541341..2546014, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene membrane-bound O-acyltransferase gup1 Neighboring gene LEC14B protein Neighboring gene probable ATP-dependent DNA helicase CHR719 Neighboring gene serine/threonine-protein phosphatase BSL1 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5S rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosomal large subunit assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ribosome biogenesis protein NOP53
Names
Os05g0144200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    2555829..2560481 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781979.3 → XP_015637465.1  ribosome biogenesis protein NOP53

    UniProtKB/TrEMBL
    B7F9E7, Q60EX8
    Conserved Domains (1) summary
    pfam07767
    Location:11 → 368
    Nop53; Nop53 (60S ribosomal biogenesis)
Nucleotide Protein
Heading Accession and Version

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