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LOC4337794 pentatricopeptide repeat-containing protein At4g35850, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337794, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4337794
Gene description
pentatricopeptide repeat-containing protein At4g35850, mitochondrial
Locus tag
OSNPB_050145600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flowers (RPKM 41.6), flower buds (RPKM 40.2) and 6 other tissues See more
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Genomic context

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See LOC4337794 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (2632598..2638740, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (2618167..2624333, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene CRM-domain containing factor CFM9, mitochondrial Neighboring gene VIN3-like protein 1 Neighboring gene uncharacterized LOC4337795 Neighboring gene uncharacterized LOC4337796

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein At4g35850, mitochondrial
Names
Os05g0145600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    2632598..2638740 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785260.3 → XP_015640746.1  pentatricopeptide repeat-containing protein At4g35850, mitochondrial

    UniProtKB/TrEMBL
    B9FME6, Q6ASS1, Q6AUH7
    Conserved Domains (2) summary
    PLN03218
    Location:110 → 241
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:124 → 151
    PPR; PPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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