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LOC4337827 transport inhibitor response 1-like protein Os05g0150500 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337827, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4337827
Gene description
transport inhibitor response 1-like protein Os05g0150500
Locus tag
OSNPB_050150500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsJ_17141; P0001A07.4
Expression
Ubiquitous expression in flower buds (RPKM 38.2), flowers (RPKM 33.5) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (2907132..2913545, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (2892701..2899137, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene probable chromatin-remodeling complex ATPase chain Neighboring gene double-stranded RNA-binding protein 2-like Neighboring gene uncharacterized LOC136356499 Neighboring gene ATP-dependent DNA helicase Q-like SIM Neighboring gene heavy metal-associated isoprenylated plant protein 36

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transport inhibitor response 1-like protein Os05g0150500
Names
F-box domain and LRR containing protein
LOC_Os05g05800
TIR1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420176.1 → NP_001407105.1  transport inhibitor response 1-like protein Os05g0150500

    Status: VALIDATED

    Source sequence(s)
    AK121600, AP014961, CI148632, CI304471, CI531852, CI605360, CI726514
    UniProtKB/Swiss-Prot
    A0A0P0WI01, Q0DKP3, Q5WN05
    UniProtKB/TrEMBL
    B0LXW5

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    2907132..2913545 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0DKP3.2 GenPept UniProtKB/Swiss-Prot:Q0DKP3

Gene LinkOut

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Molecular Biology Databases
Research Materials