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LOC4337911 uncharacterized LOC4337911 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337911, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4337911
Gene description
uncharacterized LOC4337911
Locus tag
OSNPB_050165400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4337911 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (3858512..3862017)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (3839679..3843169)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4337909 Neighboring gene uncharacterized LOC4337910 Neighboring gene mitochondrial import inner membrane translocase subunit TIM17-2-like Neighboring gene LOB domain-containing protein 15 Neighboring gene uncharacterized LOC4337912

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4337911
Names
Os05g0165400

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    3858512..3862017
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785317.3 → XP_015640803.1  uncharacterized protein LOC4337911

    UniProtKB/TrEMBL
    A0A0P0WIH9, Q0DKG4
    Conserved Domains (1) summary
    pfam10181
    Location:100 → 163
    PIG-H; GPI-GlcNAc transferase complex, PIG-H component

  2. XM_066310821.1 → XP_066166918.1  uncharacterized protein LOC4337911

    UniProtKB/TrEMBL
    A0A0P0WIH9, Q0DKG4
Nucleotide Protein
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Gene LinkOut

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