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LOC4338099 uncharacterized LOC4338099 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338099, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4338099
Gene description
uncharacterized LOC4338099
Locus tag
OSNPB_050212200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 21.2), mature seeds (RPKM 20.1) and 6 other tissues See more
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Genomic context

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See LOC4338099 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (6960232..6963117, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (6936858..6939777, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene obtusifoliol 14-alpha demethylase Neighboring gene pentatricopeptide repeat-containing protein At3g49170, chloroplastic Neighboring gene endoglucanase 15-like Neighboring gene uncharacterized LOC4338101

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized LOC4338099
Names
Os05g0212200

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420275.1 → NP_001407204.1  uncharacterized LOC4338099

    Status: VALIDATED

    Source sequence(s)
    AK243384, CI620924, CI771157
    UniProtKB/TrEMBL
    A0A0P0WJI2, B8AZ70

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    6960232..6963117 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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