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LOC4338177 cyclin-A1-4-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338177, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4338177
Gene description
cyclin-A1-4-like
Locus tag
OSNPB_050237100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CYCA1-4; CycA1;4; OJ1384_A02.11
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Genomic context

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See LOC4338177 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (8401203..8404201)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (8367339..8370311)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356608 Neighboring gene uncharacterized LOC112939024 Neighboring gene cytochrome b561 and DOMON domain-containing protein At3g61750 Neighboring gene serine/threonine-protein kinase AGC1-7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic cell cycle phase transition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cyclin-dependent protein kinase holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclin-A1-4
Names
G2/mitotic-specific cyclin-A1-4
LOC_Os05g14730

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420286.1 → NP_001407215.1  cyclin-A1-4 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK103430, AP014961, CI277800
    UniProtKB/Swiss-Prot
    Q0DJR9, Q6F346

  2. NM_001420287.1 → NP_001407216.1  cyclin-A1-4 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK103430, AP014961, CI277800

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    8401203..8404201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066310224.1 → XP_066166321.1  cyclin-A1-4 isoform X1

  2. XM_066310225.1 → XP_066166322.1  cyclin-A1-4 isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0DJR9.2 GenPept UniProtKB/Swiss-Prot:Q0DJR9

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials