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LOC4338322 acetyl-CoA carboxylase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338322, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4338322
Gene description
acetyl-CoA carboxylase 2-like
Locus tag
OSNPB_050295300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ACC2; OsJ_17935
Expression
Ubiquitous expression in roots before flowering (RPKM 51.3), flower buds (RPKM 45.8) and 6 other tissues See more
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Genomic context

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See LOC4338322 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
34
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (13131744..13145598, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (13064185..13078039, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene protein NUCLEOLAR FACTOR 1 Neighboring gene uncharacterized LOC9270759 Neighboring gene phosphatidate cytidylyltransferase, mitochondrial Neighboring gene lactoylglutathione lyase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables acetyl-CoA carboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetyl-CoA carboxylase 2
Names
LOC_Os05g22940
NP_001407229.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420300.1 → NP_001407229.1  acetyl-CoA carboxylase 2

    Status: VALIDATED

    Source sequence(s)
    AP014961
    UniProtKB/Swiss-Prot
    B9FK36, Q0DJE8
    UniProtKB/TrEMBL
    A2Y2U1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    13131744..13145598 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B9FK36.2 GenPept UniProtKB/Swiss-Prot:B9FK36

Gene LinkOut

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Research Materials