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LOC4338323 phosphatidate cytidylyltransferase, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338323, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4338323
Gene description
phosphatidate cytidylyltransferase, mitochondrial
Locus tag
OSNPB_050295700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 15.9), leaves before flowering (RPKM 15.9) and 6 other tissues See more
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Genomic context

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See LOC4338323 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (13156126..13160476, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (13090381..13092956, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9270759 Neighboring gene acetyl-CoA carboxylase 2-like Neighboring gene lactoylglutathione lyase Neighboring gene uncharacterized LOC4338325

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidate cytidylyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CDP-diacylglycerol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cardiolipin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidate cytidylyltransferase, mitochondrial; uncharacterized protein LOC4338323
Names
Os05g0295700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    13156126..13160476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066310452.1 → XP_066166549.1  uncharacterized protein LOC4338323 isoform X1

  2. XM_066310454.1 → XP_066166551.1  uncharacterized protein LOC4338323 isoform X1

  3. XM_066310451.1 → XP_066166548.1  uncharacterized protein LOC4338323 isoform X1

  4. XM_066310453.1 → XP_066166550.1  uncharacterized protein LOC4338323 isoform X1

  5. XM_066310455.1 → XP_066166552.1  uncharacterized protein LOC4338323 isoform X1

  6. XM_066310469.1 → XP_066166566.1  phosphatidate cytidylyltransferase, mitochondrial isoform X6

  7. XM_026025433.2 → XP_025881218.1  phosphatidate cytidylyltransferase, mitochondrial isoform X6

    Conserved Domains (1) summary
    pfam09139
    Location:9 → 84
    Mmp37; Mitochondrial matrix Mmp37

  8. XM_066310470.1 → XP_066166567.1  phosphatidate cytidylyltransferase, mitochondrial isoform X6

  9. XM_015785109.3 → XP_015640595.1  phosphatidate cytidylyltransferase, mitochondrial isoform X3

    Conserved Domains (1) summary
    pfam09139
    Location:9 → 111
    Mmp37; Mitochondrial matrix Mmp37

  10. XM_066310458.1 → XP_066166555.1  phosphatidate cytidylyltransferase, mitochondrial isoform X3

  11. XM_026025432.2 → XP_025881217.1  phosphatidate cytidylyltransferase, mitochondrial isoform X3

    Conserved Domains (1) summary
    pfam09139
    Location:9 → 111
    Mmp37; Mitochondrial matrix Mmp37

  12. XM_015785111.3 → XP_015640597.1  phosphatidate cytidylyltransferase, mitochondrial isoform X4

    Conserved Domains (1) summary
    pfam09139
    Location:9 → 108
    Mmp37; Mitochondrial matrix Mmp37

  13. XM_066310461.1 → XP_066166558.1  phosphatidate cytidylyltransferase, mitochondrial isoform X4

  14. XM_066310460.1 → XP_066166557.1  phosphatidate cytidylyltransferase, mitochondrial isoform X4

  15. XM_066310462.1 → XP_066166559.1  phosphatidate cytidylyltransferase, mitochondrial isoform X4

  16. XM_066310468.1 → XP_066166565.1  phosphatidate cytidylyltransferase, mitochondrial isoform X5

    UniProtKB/TrEMBL
    A0A0P0WKI9, A0A8J8YD24, B8AW51, B9FNQ2

  17. XM_066310463.1 → XP_066166560.1  phosphatidate cytidylyltransferase, mitochondrial isoform X5

    UniProtKB/TrEMBL
    A0A0P0WKI9, A0A8J8YD24, B8AW51, B9FNQ2

  18. XM_066310467.1 → XP_066166564.1  phosphatidate cytidylyltransferase, mitochondrial isoform X5

    UniProtKB/TrEMBL
    A0A0P0WKI9, A0A8J8YD24, B8AW51, B9FNQ2

  19. XM_066310464.1 → XP_066166561.1  phosphatidate cytidylyltransferase, mitochondrial isoform X5

    UniProtKB/TrEMBL
    A0A0P0WKI9, A0A8J8YD24, B8AW51, B9FNQ2

  20. XM_066310466.1 → XP_066166563.1  phosphatidate cytidylyltransferase, mitochondrial isoform X5

    UniProtKB/TrEMBL
    A0A0P0WKI9, A0A8J8YD24, B8AW51, B9FNQ2

  21. XM_066310465.1 → XP_066166562.1  phosphatidate cytidylyltransferase, mitochondrial isoform X5

    UniProtKB/TrEMBL
    A0A0P0WKI9, A0A8J8YD24, B8AW51, B9FNQ2

  22. XM_066310456.1 → XP_066166553.1  uncharacterized protein LOC4338323 isoform X1

  23. XM_066310459.1 → XP_066166556.1  phosphatidate cytidylyltransferase, mitochondrial isoform X3

  24. XM_066310457.1 → XP_066166554.1  phosphatidate cytidylyltransferase, mitochondrial isoform X2

Nucleotide Protein
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