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LOC4338324 lactoylglutathione lyase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338324, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4338324
Gene description
lactoylglutathione lyase
Locus tag
OSNPB_050295800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 70.9), flower buds (RPKM 70.8) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (13161889..13166394, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (13094299..13098871, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene acetyl-CoA carboxylase 2-like Neighboring gene phosphatidate cytidylyltransferase, mitochondrial Neighboring gene uncharacterized LOC4338325 Neighboring gene uncharacterized LOC4338327

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. A nuclear-localized rice glyoxalase I enzyme, OsGLYI-8, functions in the detoxification of methylglyoxal in the nucleus. Kaur C, et al. Plant J, 2017 Feb. PMID 27797431
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Findings indicate the presence of a glyoxalase I enzyme OsGLYI-8 (EEC78918.1; AEK99333; AK070232) and methylglyoxal (MG) detoxification in the nucleus.
    Title: A nuclear-localized rice glyoxalase I enzyme, OsGLYI-8, functions in the detoxification of methylglyoxal in the nucleus.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lactoylglutathione lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactoylglutathione lyase
Names
Os05g0295800
Os05g0295850

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    13161889..13166394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781848.3 → XP_015637334.1  lactoylglutathione lyase

    UniProtKB/TrEMBL
    B8AW52, B9FNQ3
    Conserved Domains (1) summary
    PLN03042
    Location:52 → 237
    PLN03042; Lactoylglutathione lyase; Provisional
Nucleotide Protein
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