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LOC4338325 uncharacterized LOC4338325 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338325, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4338325
Gene description
uncharacterized LOC4338325
Locus tag
OSNPB_050295900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4338325 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (13174271..13183383, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (13106685..13115833, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene phosphatidate cytidylyltransferase, mitochondrial Neighboring gene lactoylglutathione lyase Neighboring gene uncharacterized LOC4338327 Neighboring gene uncharacterized LOC107280835

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4338325
Names
Os05g0295900
proline-, glutamic acid- and leucine-rich protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    13174271..13183383 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781951.3 → XP_015637437.1  uncharacterized protein LOC4338325

    UniProtKB/TrEMBL
    A0A0P0WK87, B9FNQ4, Q0DJE5
    Conserved Domains (1) summary
    pfam08167
    Location:38 → 224
    RIX1; rRNA processing/ribosome biogenesis
Nucleotide Protein
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