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LOC4338562 uncharacterized LOC4338562 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338562, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4338562
Gene description
uncharacterized LOC4338562
Locus tag
OSNPB_050366900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in flower buds (RPKM 126.3), milk grains (RPKM 68.7) and 1 other tissue See more
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (17721965..17723927, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (17621525..17623498, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4338559 Neighboring gene beta-glucosidase 22-like Neighboring gene putative beta-glucosidase 23 Neighboring gene PHD finger-like domain-containing protein 5A Neighboring gene nucleolar protein 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
uncharacterized protein LOC4338562
Names
Os05g0366900

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    17721965..17723927 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015782807.3 → XP_015638293.1  uncharacterized protein LOC4338562 isoform X1

    UniProtKB/TrEMBL
    B8AXF4, Q6L596

  2. XM_015782808.3 → XP_015638294.1  uncharacterized protein LOC4338562 isoform X2

    UniProtKB/TrEMBL
    B8AXF4, Q0DIS6, Q60DX5
Nucleotide Protein
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