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LOC4338644 annexin D4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338644, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4338644
Gene description
annexin D4
Locus tag
OSNPB_050382600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flowers (RPKM 9.1), roots before flowering (RPKM 6.5) and 4 other tissues See more
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Genomic context

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See LOC4338644 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (18595731..18597692, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (18494331..18496592, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene cation/H(+) antiporter 20 Neighboring gene cytochrome P450 CYP94D108 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene annexin D3 Neighboring gene mitochondrial fission 1 protein A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
annexin D4
Names
Os05g0382600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    18595731..18597692 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015782141.3 → XP_015637627.1  annexin D4

    UniProtKB/TrEMBL
    B7E4J4, B8AXS2, Q6L4C6
    Conserved Domains (1) summary
    cl02574
    Location:266 → 314
    Annexin
Nucleotide Protein
Heading Accession and Version

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