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LOC4338667 large ribosomal subunit protein uL1c [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338667, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4338667
Gene description
large ribosomal subunit protein uL1c
Locus tag
OSNPB_050388500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4338667 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (18890978..18895109)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (18789641..18793663)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene protein N-terminal glutamine amidohydrolase-like Neighboring gene putative NAD kinase 3 Neighboring gene protein RETICULATA-RELATED 4, chloroplastic Neighboring gene AP2-like ethylene-responsive transcription factor At2g41710

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
large ribosomal subunit protein uL1c
Names
50S ribosomal protein L1, chloroplastic
Os05g0388500

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    18890978..18895109
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785178.3 → XP_015640664.1  large ribosomal subunit protein uL1c

    UniProtKB/TrEMBL
    B9FPD8, Q0DII0, Q60E59
    Conserved Domains (1) summary
    cl00322
    Location:123 → 351
    Ribosomal_L1; Ribosomal protein L1. The L1 protein, located near the E-site of the ribosome, forms part of the L1 stalk along with 23S rRNA. In bacteria and archaea, L1 functions both as a ribosomal protein that binds rRNA, and as a translation repressor that binds ...
Nucleotide Protein
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