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LOC4338738 probable manganese-transporting ATPase PDR2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338738, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4338738
Gene description
probable manganese-transporting ATPase PDR2
Locus tag
OSNPB_050402800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 24.7), leaves after flowering (RPKM 23.0) and 6 other tissues See more
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Genomic context

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See LOC4338738 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (19711474..19726802, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (19609379..19624744, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356729 Neighboring gene fructose-bisphosphate aldolase 1, cytoplasmic-like Neighboring gene probable aspartic proteinase GIP2 Neighboring gene probable aspartic proteinase GIP2 Neighboring gene probable aspartic proteinase GIP2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase-coupled monoatomic cation transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type ion transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable manganese-transporting ATPase PDR2
Names
Os05g0402800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    19711474..19726802 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015783764.3 → XP_015639250.1  probable manganese-transporting ATPase PDR2

    UniProtKB/TrEMBL
    B8AY36
    Conserved Domains (1) summary
    cd07543
    Location:170 → 1091
    P-type_ATPase_cation; P-type cation-transporting ATPases, similar to human cation-transporting ATPase type 13A1 (ATP13A1) and Saccharomyces manganese-transporting ATPase 1 Spf1p
Nucleotide Protein
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