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LOC4338825 cytochrome c-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338825, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4338825
Gene description
cytochrome c-like
Locus tag
OSNPB_050420600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CC-1; OsJ_18585; OsJ_017825
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Genomic context

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See LOC4338825 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (20733777..20736184)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (20630032..20632329)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor ERF008 Neighboring gene uncharacterized LOC136356676 Neighboring gene protein WVD2-like 7 Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene uncharacterized protein At5g08430 Neighboring gene uncharacterized LOC136356554 Neighboring gene uncharacterized LOC136356553

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables electron transfer activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial electron transport, cytochrome c to oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial electron transport, ubiquinol to cytochrome c IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial intermembrane space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome c
Names
LOC_Os05g34770
OSJNBb0092E21.3
P0426G01.18

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402558.1 → NP_001389487.1  cytochrome c

    Status: VALIDATED

    Source sequence(s)
    AU100900, CI354938, CI604781
    UniProtKB/Swiss-Prot
    A2Y4S9, B7E4T8, P00055, Q0DI31, Q6L4Z1

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    20733777..20736184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0DI31.1 GenPept UniProtKB/Swiss-Prot:Q0DI31

Gene LinkOut

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Molecular Biology Databases
Research Materials