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LOC4338944 protein ROS1C-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338944, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4338944
Gene description
protein ROS1C-like
Locus tag
OSNPB_050446550
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 20.8), flowers (RPKM 15.2) and 6 other tissues See more
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Genomic context

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See LOC4338944 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (21997479..22008527, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (21885747..21896892, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene protein BUD31 homolog 2-like Neighboring gene uncharacterized LOC4338943 Neighboring gene arginyl-tRNA--protein transferase 2 Neighboring gene uncharacterized LOC136356569 Neighboring gene uncharacterized LOC4338946

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA N-glycosylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in base-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein ROS1C-like
Names
Os05g0446550
Os05g0446600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    21997479..22008527 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015783900.3 → XP_015639386.1  protein ROS1C-like isoform X2

    UniProtKB/TrEMBL
    B9FPV5
    Conserved Domains (2) summary
    pfam15628
    Location:1683 → 1784
    RRM_DME; RRM in Demeter
    cl23768
    Location:1271 → 1452
    ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

  2. XM_015783899.3 → XP_015639385.1  protein ROS1C-like isoform X1

    UniProtKB/TrEMBL
    B9FPV5
    Conserved Domains (2) summary
    pfam15628
    Location:1684 → 1785
    RRM_DME; RRM in Demeter
    cl23768
    Location:1272 → 1453
    ENDO3c; endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

RNA

  1. XR_010741543.1 RNA Sequence

  2. XR_001546028.3 RNA Sequence

  3. XR_001546027.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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