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LOC4338946 uncharacterized LOC4338946 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338946, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4338946
Gene description
uncharacterized LOC4338946
Locus tag
OSNPB_050446900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in mature seeds (RPKM 5.6), milk grains (RPKM 4.7) and 6 other tissues See more
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Genomic context

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See LOC4338946 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22026546..22029051, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (21914794..21917799, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene protein ROS1C-like Neighboring gene arginyl-tRNA--protein transferase 2 Neighboring gene uncharacterized LOC136356569 Neighboring gene pleckstrin homology domain-containing protein 1 Neighboring gene auxin transporter-like protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4338946
Names
Os05g0446900

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    22026546..22029051 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066310968.1 → XP_066167065.1  uncharacterized protein LOC4338946 isoform X4

  2. XM_015782503.3 → XP_015637989.1  uncharacterized protein LOC4338946 isoform X2

    UniProtKB/TrEMBL
    A0A0N7KKV7, B8AYR6, Q688J4
    Conserved Domains (1) summary
    cd05467
    Location:101 → 194
    CBM20; The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is ...

  3. XM_015782504.3 → XP_015637990.1  uncharacterized protein LOC4338946 isoform X3

    Conserved Domains (1) summary
    cd05467
    Location:115 → 208
    CBM20; The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is ...

  4. XM_015782502.3 → XP_015637988.1  uncharacterized protein LOC4338946 isoform X1

    UniProtKB/TrEMBL
    B8AYR6
    Conserved Domains (1) summary
    cd05467
    Location:115 → 208
    CBM20; The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is ...
Nucleotide Protein
Heading Accession and Version

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