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LOC4338956 uncharacterized LOC4338956 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338956, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4338956
Gene description
uncharacterized LOC4338956
Locus tag
OSNPB_050449600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4338956 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22181919..22185076)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (22068310..22071762)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4338953 Neighboring gene coronatine-insensitive protein homolog 1b-like Neighboring gene uncharacterized LOC136356717 Neighboring gene transcription factor DIVARICATA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucan catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4338956
Names
Os05g0449600
beta-glucosidase BoGH3B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    22181919..22185076
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781839.3 → XP_015637325.1  uncharacterized protein LOC4338956

    UniProtKB/TrEMBL
    B9FPW2
    Conserved Domains (2) summary
    COG1472
    Location:25 → 457
    BglX; Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism]
    pfam01915
    Location:392 → 600
    Glyco_hydro_3_C; Glycosyl hydrolase family 3 C-terminal domain

RNA

  1. XR_001545693.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Research Materials