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LOC4339011 large ribosomal subunit protein eL36x [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339011, updated on 13-Jul-2024

Summary

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Gene symbol
LOC4339011
Gene description
large ribosomal subunit protein eL36x
Locus tag
OSNPB_050459900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 385.3), roots before flowering (RPKM 329.1) and 6 other tissues See more
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Genomic context

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See LOC4339011 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22709948..22711870)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (22596350..22598351)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene protein ESMERALDA 1 Neighboring gene uncharacterized LOC136356550 Neighboring gene fasciclin-like arabinogalactan protein 4 Neighboring gene heat shock 70 kDa protein 4 Neighboring gene uncharacterized LOC107280970

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
large ribosomal subunit protein eL36x
Names
60S ribosomal protein L36-3
Os05g0459900

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    22709948..22711870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785180.3 → XP_015640666.1  large ribosomal subunit protein eL36x

    UniProtKB/TrEMBL
    A0A0P0WNC2, A2Y5F8, A6MZE1, Q0DHK6, Q6L510
    Conserved Domains (1) summary
    pfam01158
    Location:7 → 101
    Ribosomal_L36e; Ribosomal protein L36e

  2. XM_015785181.3 → XP_015640667.1  large ribosomal subunit protein eL36x

    UniProtKB/TrEMBL
    A0A0P0WNC2, A2Y5F8, A6MZE1, Q0DHK6, Q6L510
    Conserved Domains (1) summary
    pfam01158
    Location:7 → 101
    Ribosomal_L36e; Ribosomal protein L36e
Nucleotide Protein
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