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LOC4339534 uncharacterized LOC4339534 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339534, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4339534
Gene description
uncharacterized LOC4339534
Locus tag
OSNPB_050551600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in mature seeds (RPKM 5.5), milk grains (RPKM 4.3) and 6 other tissues See more
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Genomic context

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See LOC4339534 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (27582264..27583752)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (27417842..27419094)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene vegetative cell wall protein gp1-like Neighboring gene uncharacterized LOC4339533 Neighboring gene adenylate isopentenyltransferase Neighboring gene CRM-domain containing factor CFM3, chloroplastic/mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC4339534
Names
COPII coat assembly protein SEC16
Os05g0551600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    27582264..27583752
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015782872.3 → XP_015638358.1  uncharacterized protein LOC4339534

    UniProtKB/TrEMBL
    A0A0P0WQM8, B8AWE9
    Conserved Domains (1) summary
    pfam07797
    Location:151 → 200
    DUF1639; Protein of unknown function (DUF1639)
Nucleotide Protein
Heading Accession and Version

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