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LOC4339674 isocitrate dehydrogenase [NADP] [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339674, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4339674
Gene description
isocitrate dehydrogenase [NADP]
Locus tag
OSNPB_050573200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in flowers (RPKM 12.3), flower buds (RPKM 2.8) and 1 other tissue See more
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Genomic context

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See LOC4339674 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (28732600..28736460)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (28547533..28551361)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g39680 Neighboring gene uncharacterized LOC4339673 Neighboring gene uncharacterized LOC4339675 Neighboring gene nuclear transcription factor Y subunit B-4-like Neighboring gene uncharacterized LOC107277099

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables isocitrate dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NADP metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in isocitrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isocitrate dehydrogenase [NADP]
Names
Os05g0573200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    28732600..28736460
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015784734.3 → XP_015640220.1  isocitrate dehydrogenase [NADP]

    UniProtKB/TrEMBL
    A0A0P0WR73, A2Y7Q3, Q0DFS8, Q65XK3, Q9XGU7
    Conserved Domains (1) summary
    PLN00103
    Location:1 → 409
    PLN00103; isocitrate dehydrogenase (NADP+); Provisional
Nucleotide Protein
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