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LOC4339790 probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL8 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339790, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4339790
Gene description
probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL8
Locus tag
OSNPB_050591600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
LOGL8; OsJ_19750; P0663C08.4
Expression
Biased expression in roots before flowering (RPKM 42.2), flowers (RPKM 4.1) and 1 other tissue See more
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (29656592..29660835)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (29470017..29474729)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281075 Neighboring gene uncharacterized LOC9268401 Neighboring gene receptor-like cytoplasmic kinase 176 Neighboring gene hypersensitive-induced response protein-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing N-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytokinin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL8
Names
LOC_Os05g51390
OSJNBa0022J22.18
Protein LONELY GUY-like 8
NP_001407859.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001420930.1 → NP_001407859.1  probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL8

    Status: VALIDATED

    Source sequence(s)
    AK242659, CI394128, CI741015
    UniProtKB/Swiss-Prot
    A0A0N7KLC4, B7F9L8, Q0DFG8, Q6L4S4
    UniProtKB/TrEMBL
    A2Y838

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    29656592..29660835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0DFG8.3 GenPept UniProtKB/Swiss-Prot:Q0DFG8

Gene LinkOut

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Molecular Biology Databases
Research Materials