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LOC4339792 ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339792, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4339792
Gene description
ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic
Locus tag
OSNPB_050592100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 194.2), roots after flowering (RPKM 115.3) and 5 other tissues See more
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Genomic context

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See LOC4339792 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (29682518..29686043, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (29495934..29499478, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene receptor-like cytoplasmic kinase 176 Neighboring gene hypersensitive-induced response protein-like protein 1 Neighboring gene inactive protein RESTRICTED TEV MOVEMENT 2 Neighboring gene plant cysteine oxidase 2 Neighboring gene DNA damage-binding protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP-dependent peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein quality control for misfolded or incompletely synthesized proteins IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of endopeptidase Clp complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic
Names
Os05g0592100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    29682518..29686043 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785285.3 → XP_015640771.1  ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic

    UniProtKB/TrEMBL
    A0A0P0WRR2, B8AXJ0, Q0DFG6, Q6L4S1
    Conserved Domains (1) summary
    cd07017
    Location:162 → 342
    S14_ClpP_2; Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease
Nucleotide Protein
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