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LOC4339813 pathogenesis-related protein PR-1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339813, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4339813
Gene description
pathogenesis-related protein PR-1
Locus tag
OSNPB_050595200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4339813 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (29822243..29825026, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (29637115..29638562, complement)

Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory subunit RPN13 Neighboring gene sm-like protein LSM8 Neighboring gene pathogenesis-related protein 1 Neighboring gene UDP-glucose 4-epimerase 1-like Neighboring gene uncharacterized LOC4339814 Neighboring gene nucleoside diphosphate kinase 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pathogenesis-related protein 1A1; pathogenesis-related protein PR-1
Names
Os05g0595200

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

    Range
    29822243..29825026 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066310513.1 → XP_066166610.1  pathogenesis-related protein 1A1 isoform X1

  2. XM_015784748.3 → XP_015640234.1  pathogenesis-related protein PR-1 isoform X2

    UniProtKB/TrEMBL
    Q5KQH4, Q5TKF6
    Conserved Domains (1) summary
    cd05381
    Location:111 → 245
    CAP_PR-1; CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain of pathogenesis-related protein 1 (PR-1) family proteins
Nucleotide Protein
Heading Accession and Version

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